Deep Fritz 13 Portable Torrent
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In Italy, an intermittent stream is termed a torrent (Italian: torrente). In full flood the stream may or may not be \"torrential\" in the dramatic sense of the word, but there will be one or more seasons in which the flow is reduced to a trickle or less. Typically torrents have Apennine rather than Alpine sources, and in the summer they are fed by little precipitation and no melting snow. In this case the maximum discharge will be during the spring and autumn.
Today, more than 20 years since Deep Blue defeated Kasparov, chess engines have even become a lot stronger and increase in playing strength each year. This is partly due to the increase in processing power that enables calculations to be made to even greater depths in a given time.
The emerging next-generation sequencing (NGS) is bringing, besides the natural huge amounts of data, an avalanche of new specialized tools (for analysis, compression, alignment, among others) and large public and private network infrastructures. Therefore, a direct necessity of specific simulation tools for testing and benchmarking is rising, such as a flexible and portable FASTQ read simulator, without the need of a reference sequence, yet correctly prepared for producing approximately the same characteristics as real data.
We present XS, a skilled FASTQ read simulation tool, flexible, portable (does not need a reference sequence) and tunable in terms of sequence complexity. It has several running modes, depending on the time and memory available, and is aimed at testing computing infrastructures, namely cloud computing of large-scale projects, and testing FASTQ compression algorithms. Moreover, XS offers the possibility of simulating the three main FASTQ components individually (headers, DNA sequences and quality-scores).
We present XS, a skilled FASTQ read simulation tool, flexible, portable (does not need a reference sequence) and tunable in terms of sequence complexity. It has several running modes, depending on the time and memory available, and is aimed at testing computing infrastructures, namely cloud computing of large-scale projects, and testing FASTQ compression algorithms. 7211a4ac4a
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